Below is a fairly extensive list of collegiate musical theatre programs within the United States.  Happy hunting!

B.F.A. MUSICAL THEATRE PROGRAMS

Abilene Christian University Department of Theatre Abilene, TX
American Musical and Dramatic Academy – Los Angeles American Musical and Dramatic Academy Los Angeles, CA
American Musical and Dramatic Academy – New York American Musical and Dramatic Academy New York, NY
Avila University Department of Theatre Kansas City, MO
Ball State University Department of Theatre and Dance Muncie, IN
Belmont University Belmont School of Music Nashville, TN
Boston Conservatory Department of Theater Boston, MA
Brigham Young University – Provo Department of Theatre and Media Provo, UT
California State University – Fullerton Department of Theatre and Dance Fullerton, CA
Catawba College Department of Theatre Arts Salisbury, NC
Central Michigan University Department of Communication and Dramatic Arts Mount Pleasant, MI
Central Michigan University School of Music Mount Pleasant, MI
Clarion University Department of Theatre Clarion, PA
Coastal Carolina University Department of Theatre Conway, SC
Creighton University Department of Fine and Performing Arts, Music Program Omaha, NE
Culver-Stockton College Department of Fine Arts, Theatre program Canton, MO
Drake University Theatre Arts Department Des Moines, IA
Elon University Department of Performing Arts Elon, NC
Emerson College Department of Performing Arts Boston, MA
Florida State University School of Theatre Tallahassee, FL
Howard University Department of Theatre Arts Washington, DC
Illinois Wesleyan University School of Theatre Arts Bloomington, IL
Indiana University – Bloomington Department of Theatre and Drama Bloomington, IN
Ithaca College Department of Theatre Arts Ithaca, NY
Jacksonville University Department of Music Jacksonville, FL
Kent State University – Kent School of Theatre and Dance Kent, OH
Lees-McRae College Department of Performing Arts Banner Elk, NC
Lindenwood University School of Fine and Performing Arts, Theatre program St. Charles, MO
Mars Hill College Department of Theatre Mars Hill, NC
Metropolitan State University of Denver Department of Theatre Denver, CO
Millikin University Department of Theatre and Dance Decatur, IL
Missouri State University Department of Theatre and Dance Springfield, MO
Nazareth College Department of Theatre and Dance Rochester, New York
Nebraska Wesleyan University Theatre Lincoln, NE
North Dakota State University Theatre Department Fargo, ND
Ohio Northern University Department of Communication and Theatre Arts Ada, OH
Otterbein University Department of Theatre and Dance Westerville, OH
Pace University Department of Performing Arts New York, NY
Pennsylvania State University School of Theatre University Park, PA
Point Park University Conservatory of Performing Arts Pittsburgh, PA
Reinhardt University Theatre Program Waleska, GA
Reinhardt University School of Music Waleska, GA
Rockford College Department of Performing Arts Rockford, IL
Roosevelt University Chicago College of Performing Arts, Theatre Conservatory Chicago, IL
Sam Houston State University Department of Theatre and Dance, Theatre Program Huntsville, TX
Samford University School of the Arts Department of Theatre Birmingham, AL
Shenandoah University Department of Theatre and Musical Theatre Winchester, VA
Shorter University Theatre Department Rome, GA
Shorter University Music Rome, GA
Southeast Missouri State University Department of Theatre and Dance Cape Girardeau, MO
Southern Illinois University – Carbondale Department of Theater Carbondale, IL
State University of New York – Buffalo Department of Theatre and Dance Buffalo, NY
State University of New York – Fredonia Department of Theatre and Dance Fredonia, NY
Syracuse University Department of Drama Syracuse, NY
Texas Christian University Department of Theatre Fort Worth, TX
Texas State University Department of Theatre and Dance San Marcos, TX
University of Arizona – Tucson The School of Theatre, Film & Television Tucson, AZ
University of California – Irvine Deparment of Drama Irvine, CA
University of Central Florida UCF Conservatory Theatre Orlando, FL
University of Cincinnati College Conservatory of Music, Department of Drama Cincinnati, OH
University of Colorado – Boulder Department of Theatre and Dance Boulder, CO
University of Florida – Gainsville School of Theatre and Dance Gainesville, FL
University of Hartford Hartt School of Music, Theater and Dance West Hartford, CT
University of Idaho The Lionel Hampton School of Music Moscow, ID
University of Memphis Department of Theatre and Dance Memphis, TN
University of Miami Department of Theatre Arts Coral Gables, FL
University of Michigan – Ann Arbor School of Music, Dance and Theatre Ann Arbor, MI
University of Minnesota – Duluth Department of Theatre Duluth, MN
University of Mississippi Department of Theatre Arts Oxford, MS
University of North Georgia and Brenau University College of Arts & Letters, Department of Theatre Dahlonega, GA
University of South Dakota Department of Theatre Vermillion, SD
University of Texas – El Paso Department of Theatre, Dance, and Film El Paso, TX
University of the Arts College of Performing Arts Philadelphia, PA
University of Utah College of Fine Arts – Department of Theatre Salt Lake City, UT
University of Wisconsin – Milwaukee Peck School of The Arts Milwaukee, WI
University of Wisconsin – Stevens Point Department of Theatre and Dance Stevens Point, WI
Viterbo University Department of Theatre and Music Theatre La Crosse, WI
Webster University The Conservatory of Theatre Arts St Louis, MO
Western Carolina University School of Stage and Screen Cullowhee, NC
Western Illinois University Department of Theatre and Dance Macomb, IL
Western Michigan University Department of Theatre Kalamazoo, MI
Wichita State University The School of Performing Arts Wichita, KS
William Peace University Theatre Department Raleigh, NC
Youngstown State University Department of Theater and Dance Youngstown, OH

B.A. MUSICAL THEATRE PROGRAMS

American University Department of Performing Arts Washington, DC
Anderson University (SC) College of Visual & Performing Arts, Theatre Anderson, SC
Belhaven University Music Department Jackson, MS
Birmingham-Southern College Department of Theatre Birmingham, AL
Bowling Green State University Department of Theatre and Film Bowling Green, OH
California State University – Chico Theatre Deparment Chico, CA
California State University – San Bernadino Music Department San Bernardino, CA
Carthage College Department of Theatre Kenosha, WI
Catawba College Department of Theatre Arts Salisbury, NC
Clarke University Drama Department Dubuque, IA
College of the Ozarks The Theatre Department Point Lookout, MO
College of Wooster, The Department of Theatre and Dance Wooster, OH
College of Wooster, The Department of Music Wooster, OH
Converse College Department of Theatre and Dance Spartanburg, SC
Elmhurst College Department of Communication Arts & Sciences Elmhurst, IL
Emory and Henry College Theatre Department Emory, VA
Faulkner University Department of Fine Arts Montgomery, AL
Indiana University of Pennsylvania Department of Theatre and Dance Indiana, PA
James Madison University School of Theatre and Dance (Theatre Program) Harrisonburg, VA
Johnson State College Fine & Performing Arts Department Johnson, VT
Limestone College Theatre Department Gaffney, SC
Marywood University Department of Performing Arts – Theatre Scranton, PA
Nebraska Wesleyan University Theatre Lincoln, NE
North Carolina Central University Department of Theatre Durnham, NC
North Central College Department of Theatre Naperville, IL
Nova Southeastern University Division of Performing and Visual Arts – Theatre Program Fort Lauderdale-Davie, FL
Point Park University Conservatory of Performing Arts Pittsburgh, PA
Rowan University Theatre and Dance Glassboro, NJ
Saint Joseph’s University The Department of Music, Theatre & Film Philadelphia, PA
San Diego Christian College Music Department El Cajon, CA
Seton Hill University Department of Theatre Greensburg, PA
Southeastern Oklahoma State University Theatre Durant, OK
State University of New York – Cortland Performing Arts Department Cortland, NY
State University of New York – Geneseo School of the Arts Geneseo, NY
Sweet Briar College Department of Theatre Sweet Briar, VA
University of Alabama – Tuscaloosa Department of Theatre and Dance Tuscaloosa, AL
University of New Hampshire Department of Theatre and Dance Durham, NH
University of Northern Colorado School of Theatre and Dance Greeley, CO
University of Tampa Department of Speech, Theatre and Dance Tampa, FL
University of Tampa Department of Music Tampa, FL
University of Tulsa Department of Theatre and Musical Theatre Tulsa, OK
University of West Florida Department of Theatre Pensacola, FL
Vanguard University Department of Theatre Arts Costa Mesa, CA
Weber State University Department of Performing Arts Ogden, UT
West Virginia Wesleyan College Department of Theatre Buckhannon, WY
Western Connecticut State University The Department of Theatre Arts Danbury, CT
Wilkes University The Department of Visual and Performing Arts Wilkes-Barre, PA
William Woods University Department of Fine and Performing Arts – Theatre Program Fulton, MO
Young Harris College Division of Fine Arts – Music Young Harris, GA

B.M. MUSICAL THEATRE PROGRAMS

Arizona State University Herberger Institute for Design and the Arts – School of Music Tempe, AZ
James Madison University School of Music Harrisonburg, VA
New York University – Steinhardt School of Culture, Education and Human Development Department of Music and Performing Arts Professions New York, NY
University of Central Oklahoma School of Music Edmund, OK
University of Louisiana – Monroe Department of Visual and Performing Arts, Division of Music Monroe, LA

B.M. INTERDISCIPLINARY MUSICAL THEATRE PROGRAMS

Baldwin-Wallace College Department of Theatre and Dance Berea, OH
Coker College Department of Theater Hartsville, SC
University of Nebraska – Kearney Department of Music and Theatre Kearney, NE
University of North Carolina – Pembroke Department of English and Theatre Pembroke, NC
Westminster College of the Arts at Rider School of Fine & Performing Arts Lawrenceville, NJ